Information on CEBPE
Basic details
Alt. symbols: CRP1
Approved name: CCAAT enhancer binding protein epsilon
Alt. names: CCAAT/enhancer binding protein (C/EBP), epsilon, CCAAT/enhancer binding protein epsilon
Location: 14q11.2: 23117036 - 23120256 (-)
Gene type: protein_coding, 3 transcripts.
Scores: LoFtool: 0.507000 | pLI: 0.00239238 | LOEUF: 0.995
Normal function
CEBPE encodes the transcriptional activator CRP1 or C/EBPe (PMID: 26019275), a member of the CCAAT/enhancer binding protein family that can recognize two different motifs: the CCAAT homology sequence common to many promoters and the enhanced core homology sequence common to many enhancers (PMID: 8661101). It is required for the promyelocyte-myelocyte transition in myeloid differentiation (PMID: 10359588).
Dysfunction and disease
Homozygous missense CEBPE mutations lead to C/EBPe-associated autoinflammation and immune impairment of neutrophils (CAIN) [OMIM: 245480], which is characterized by recurrent fevers (every 2-4 weeks and lasting 4-5 days), abdominal pain and oral ulcers, as well as the development of sterile abscesses of the tongue, paronychia, and hemorrhagic diatheses not related to platelet abnormalities (PMID: 31201888). Laboratory tests show elevated inflammatory markers and defective neutrophil segmentation . These mutations lead to markedly decreased C/EBPε association with transcriptional repressors and increased occupancy on chromatin, leading to over-expression of many NLRP3- related and IFN-dependent inflammatory genes in neutrophils and IL-1 and IL-18 hypersecretion via aberrant caspase-5–mediated activation of the noncanonical inflammasome pathway in patient macrophages. However, patients do not appear to suffer serious long-term complications, presenting an average life span of more than 70 years. Notably, both monoallelic and biallelic CEBPE LOF mutations have also been associated with AD and AR forms of neutrophil-specific granule deficiency (SGD), characterized by complete loss of specific neutrophilic granules, severely impaired neutrophil function and pronounced susceptibility to bacterial infections with early mortality [OMIM: 245480]. [Load More]
[Reviewed by Xiao P. Peng on 2022-06-22 07:43:15]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of CEBPE
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000206513.6 | 1 | CCDS9589 | Select | protein_coding | 2 | Yes | 1191 | NM_001805 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in CEBPE
ID | Year | Title | Journal | PMID | Variants |
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