Information on CFTR

Basic details

Alt. symbols: CF | ABCC7 | MRP7 | ABC35 | TNR-CFTR | dJ760C5.1 | CFTR/MRP

Approved name: CF transmembrane conductance regulator
Alt. names: cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7) | ATP-binding cassette sub-family C, member 7

Location: 7q31.2: 117287120 - 117715971 (+)
Gene type: protein_coding, 38 transcripts.

Scores: LoFtool: 0.023500 | pLI: 0.00000000 | LOEUF: 1.307

HGNC: 1884

NCBI: 1080, RefSeq: NG_016465.4

Ensembl: ENSG00000001626.18

LRG_663 | Status: public

OMIM: 602421

Expression | ProteinAtlas

Normal function

The CFTR gene encodes the cystic fibrosis transmembrane conductance regulator (CFTR), a member of the ATP-binding cassette (ABC) transporter superfamily. This protein functions as a channel transporting negatively charged chloride ions across the membrane of cells that produce mucus, sweat, saliva, tears, and digestive enzymes. The transport of chloride ions helps control the movement of water in tissues, which is necessary for the production of thin, freely flowing mucus. Mucus lubricates and protects the lining of the airways, digestive system, reproductive system, and other organs and tissues. In addition, the CFTR protein regulates the function of other channels, such as those that transport positively charged sodium ions across cell membranes, which is necessary for the normal function of organs such as the lungs and pancreas. Channel activation is mediated by cycles of regulatory domain phosphorylation, ATP-binding by the nucleotide-binding domains, and ATP hydrolysis.

Dysfunction and disease

Biallelic mutations in CFTR cause cystic fibrosis [MIM:219700] (Abulí 2016 Hum Mutat 37: 516 PubMed: 26990548), or congenital bilateral absence of vas deferens [MIM:277180] (Anguiano 1992 JAMA 267: 1794 PubMed: 1545465); both, autosomal recessive conditions. However, monoallelic (class IV-V) mutations in the gene have also been associated with pancreatitis (Masson 2013 PLoS One 8: e73522 PubMed: 23951356), sweat chloride elevation without CF, neonatal hypertrypsinemia, and bronchiectasis with or without elevated sweat chloride. To date, over 1,000 mutations (mostly missense) in the CFTR gene have been associated with cystic fibrosis. These mutations are classified as class I (no mRNA or protein is produced), class II (protein is synthesized but it misfolds and does not reach the cell surface), class III (impaired channel gating), class IV (decreased conductance), class V (insufficient protein synthesis). The most common mutation, delta F508 belongs to class II, nonsense or splice-site mutations belong to class I (e.g. p.G542X, W1282X, p.R553X), missense mutations can be either class III (e.g. p.G551D, p.S549N) or class IV (e.g. p.R117H, p.R334W, and p.A455E), and class V includes some missense and some intronic mutations (e.g. c.3272-26A>G, p.A455E). Pathogenic mutations in CFTR either alter the production, the structure, or the stability of the channel; thus, impairing the transport of chloride ions and the movement of water across cell membranes. As a result, cells that line the passageways of the lungs, pancreas, and other organs produce an abnormally thick and sticky mucus, which obstructs the airways and glands. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-05-26 08:22:16]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CF Cystic fibrosis ARdict. icon 219700www icon 0 (0 fams)
CBAVD Congenital bilateral absence of vas deferens ARdict. icon 277180www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of CFTR

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000003084.11 1 CCDS5773 Select protein_coding 27 Yes 6070 NM_000492

Published variants

Found 13 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
R117H EX4 420 c.350G>A p.Arg117His missense_variant Uncertain significance 1
T351S EX8 1122 c.1052C>G p.Thr351Ser missense_variant Uncertain significance 0
G424S EX10 1340 c.1270G>A p.Gly424Ser missense_variant Uncertain significance 0
EX1-1G>A In11 c.1585-1G>A EX11-skipping ALTERS SPLICING! Pathogenic 0
G542* EX12 1694 c.1624G>T p.Gly542Ter stop_gained Pathogenic 0
I556V EX12 1736 c.1666A>G p.Ile556Val missense_variant Risk allele 0
V562I EX13 1754 c.1684G>A p.Val562Ile missense_variant Benign 0
G576A EX13 1797 c.1727G>C p.Gly576Ala missense_variant Likely Benign 0
R668C EX14 2072 c.2002C>T p.Arg668Cys missense_variant Likely Benign 0
D836Y EX15 2576 c.2506G>T p.Asp836Tyr missense_variant Benign 0
L967S EX17 2970 c.2900T>C p.Leu967Ser missense_variant Uncertain significance 0
R1162L EX22 3555 c.3485G>T p.Arg1162Leu missense_variant Likely Benign 0
Q1476* EX27 4496 c.4426C>T p.Gln1476Ter stop_gained Pathogenic 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in CFTR

ID Year Title Journal PMID Variants
91 2015 Novel mutations and polymorphisms in the CFTR gene associate... Fert. &. Stert. 26277102 1
92 2002 Variant cystic fibrosis phenotypes in the absence of CFTR mu... N. Engl. J. Med. 12167682 2
93 2006 Cystic fibrosis transmembrane conductance regulator (CFTR) g... J. Cyst. Fib. 16678503 1
94 2015 Characterization of gene mutations and phenotypes of cystic ... Respirology 25580864 1
95 2016 Clinical Phenotypes and Genotypic Spectrum of Cystic Fibrosi... J. Pediatr. 26826884 1
124 2012 CFTR mutation combinations producing frequent complex allele... Hum. Mut. 22678879 2
125 1992 Congenital bilateral absence of the vas deferens. A primaril... JAMA 1545465 1
126 2015 A genotypic-oriented view of CFTR genetics highlights specif... Mol. Med. 25910067 3
175 1997 Distinct spectrum of CFTR gene mutations in congenital absen... Hum. Gen. 9272157 1
176 2011 Orphan missense mutations in the cystic fibrosis transmembra... JMD 21708286 1
177 2004 Characterization of cystic fibrosis conductance transmembran... Hum. Reprod. 15333598 1
178 2006 Revertant mutants G550E and 4RK rescue cystic fibrosis mutan... PNAS 17098864 1
179 2007 Detection of cystic fibrosis transmembrane conductance regul... Hum. Reprod. 17329263 1
180 2018 Functional Assays Are Essential for Interpretation of Missen... Am. J. Hum. Genet. 29805046 2
181 2016 Benign and Deleterious Cystic Fibrosis Transmembrane Conduct... Plos one 27214204 1
182 2007 Does cystic fibrosis neonatal screening detect atypical CF f... Clin. Gen. 17594398 1
183 2005 Genotype-phenotype correlation for pulmonary function in cys... Thorax 15994263 2
184 2005 Diagnostic testing by CFTR gene mutation analysis in a large... JMD 15858154 2
185 2004 High heterogeneity of CFTR mutations and unexpected low inci... J. Cyst. Fib. 15698946 1
186 2005 Molecular evaluation of CFTR sequence variants in male infer... Int. J. Andr. 16128988 1
187 2013 Diagnostic contribution of molecular analysis of the cystic ... JBP 23670503 1
199 2003 Missense, nonsense, and neutral mutations define juxtaposed ... J. Biol. Chem. 12732620 1
200 2011 Mutations of the cystic fibrosis gene in patients with bronc... Ann. Rheum. Dis. 21131649 1
201 2018 Mutations in the pancreatic secretory enzymes CPA1 and CPB1 ... PNAS 29669919 1
241 2017 CFTR-France, a national relational patient database for shar... Hum. Mut. 28603918 3
305 2006 Prospective analysis of cystic fibrosis transmembrane regula... Chest 17035430 1
306 2013 Defining the disease liability of variants in the cystic fib... Nat. Genet. 23974870 2
307 2013 A conservative assessment of the major genetic causes of idi... Plos one 23951356 2
308 2014 Mechanisms of CFTR Functional Variants That Impair Regulated... Plos Gen. 25033378 1
309 2015 Benign outcome among positive cystic fibrosis newborn screen... J. Cyst. Fib. 25824995 1
484 2018 Capitalizing on the heterogeneous effects of CFTR nonsense a... Plos Gen. 30444886 1
485 2013 Distribution of CFTR mutations in the Czech population: Posi... J. Cyst. Fib. 23276700 1
486 2012 Extensive molecular analysis of patients bearing CFTR-relate... JMD 22020151 1
553 1993 Abnormal mRNA splicing resulting from three different mutati... Hum. Mol. Genet. 7689009 1
568 2021 Fighting diagnostic confirmation bias: Cystic fibrosis, alle... Clin. Case Rep. 33768849 1

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