Information on CIITA
Basic details
Alt. symbols: MHC2TA | C2TA | NLRA
Approved name: class II major histocompatibility complex transactivator
Alt. names: MHC class II transactivator, class II, major histocompatibility complex, transactivator | NLR family, acid domain containing, nucleotide-binding oligomerization domain, leucine rich repeat and acid domain containing
Location: 16p13.13: 10866222 - 10943021 (+)
Gene type: protein_coding, 20 transcripts.
Scores: LoFtool: 0.480000 | pLI: 0.00005543 | LOEUF: 0.583
Normal function
Dysfunction and disease
Bare lymphocyte syndrome, type II, complementation group A [MIM:209920] | {Rheumatoid arthritis, susceptibility to} [MIM:180300]. Mutations in the class II trans-activator (CIITA) have been shown to cause a form of immunodeficiency called Bare lymphocyte syndrome, type II, complementation group A (OMIM: 209920). Bare lymphocyte syndrome, type II, complementation group A. The bare lymphocyte syndrome type II is a member of the relatively heterogeneous class of SCID, or severe combined immunodefic iency. It is associated with, and probably results from, the lack of expression of HLA antigens on some cells of hematopoietic origin (Touraine et al., 1978). First symptoms presented after the age of 3 or 4 months. All children had severe and persistent diarrhea, mucocutaneous candidiasis, interstitial pneumonia and various bacterial infections but no proved systemic viral infections. The findings of special studies supported the important role of class I HLA antigens in antigen recognition by T lymphocytes. [Load More]
[Gene NOT reviewed yet]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of CIITA
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
214 | ENST00000618327.4 | CCDS73826 | protein_coding | 20 | No | 4657 | NM_001286402,NM_001379330,NM_001379332,NM_001379334 | ||
202 | ENST00000381835.9 | CCDS66943 | protein_coding | 18 | No | 2344 | NM_001286403 | ||
201 | ENST00000324288.14 | 1 | CCDS10544 | Select | protein_coding | 20 | Yes | 16059 | NM_000246,NM_001379331,NM_001379333 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in CIITA
ID | Year | Title | Journal | PMID | Variants |
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