Information on COPG1

Basic details

Alt. symbols: COPG

Approved name: COPI coat complex subunit gamma 1
Alt. names: coatomer protein complex, subunit gamma, coatomer protein complex, subunit gamma 1 | coat protein gamma-cop

Location: 3q21.3: 129249606 - 129277773 (+)
Gene type: protein_coding, 10 transcripts.

Scores: LoFtool: | pLI: 0.99849931 | LOEUF: 0.397

HGNC: 2236

NCBI: 22820, RefSeq: .0

Ensembl: ENSG00000181789.14

LRG_ | Status: none

OMIM: 615525

Expression | ProteinAtlas

Normal function

Dysfunction and disease

Biallelic mutations in this have have been linked to a subtype of combined immunodeficiency. In the study first describing this condition, patient fibroblasts showed comparable (to WT) expression levels of the mutant protein and co-immunoprecipitation assays suggested that mutant COPG1 integrated normally into the COPI complex. However, those patient fibroblasts showed impaired retrograde COPI transport, and direct binding of the mutant COPG1-K652E coatomer to the KDELR1 protein was disrupted. N evertheless, binding to ARFGAP1 was retained and that may have compensated for the defect. Vesicle formation was unaffected. Interestingly, embryonic fibroblasts from mutant mice expressing the K652E mutation, showed similar defects. The authors concluded that the impaired retrieval of KDEL-bearing chaperones to the ER causes exaggerated ER stress in activated B and T cells. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2024-10-20 14:21:41]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CID38 Combined immunodeficiency 38 ARdict. icon Loss of Function 620983www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of COPG1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000314797.10 CCDS33851 Select protein_coding 24 Yes 3078 NM_016128

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in COPG1

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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