Information on COPG1
Alt. symbols: COPG
Approved name: COPI coat complex subunit gamma 1
Alt. names: coatomer protein complex, subunit gamma, coatomer protein complex, subunit gamma 1 | coat protein gamma-cop
Location: 3q21.3: 129249606 - 129277773 (+)
Gene type: protein_coding, 10 transcripts.
Scores: LoFtool: | pLI: 0.99849931 | LOEUF: 0.397
Gene Ontology (GO)
- Molecular function:
- Cell component: endoplasmic reticulum-Golgi intermediate compartment [GO:0005793]; endoplasmic reticulum [GO:0005783]; Golgi membrane [GO:0000139]; COPI vesicle coat [GO:0030126]
- Biological process: endoplasmic reticulum to Golgi vesicle-mediated transport [GO:0006888]; organelle transport along microtubule [GO:0072384]; protein secretion [GO:0009306]; intra-Golgi vesicle-mediated transport [GO:0006891]
Normal function
Dysfunction and disease
Biallelic mutations in this have have been linked to a subtype of combined immunodeficiency. In the study first describing this condition, patient fibroblasts showed comparable (to WT) expression levels of the mutant protein and co-immunoprecipitation assays suggested that mutant COPG1 integrated normally into the COPI complex. However, those patient fibroblasts showed impaired retrograde COPI transport, and direct binding of the mutant COPG1-K652E coatomer to the KDELR1 protein was disrupted. N evertheless, binding to ARFGAP1 was retained and that may have compensated for the defect. Vesicle formation was unaffected. Interestingly, embryonic fibroblasts from mutant mice expressing the K652E mutation, showed similar defects. The authors concluded that the impaired retrieval of KDEL-bearing chaperones to the ER causes exaggerated ER stress in activated B and T cells. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2024-10-20]
Associated conditions
Please mind that curation (inclusion of all reported patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of COPG1
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
201 | ENST00000314797.10 | CCDS33851 | Select | protein_coding | 24 | Yes | 3078 | NM_016128 |
Published variants
Found 0 variants
Var.name ⓘ | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that curation (inclusion of all reported gene variants) has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in COPG1
Please mind that curation (inclusion of all relevant literature) has not started yet. Please contact us if you want to volunteer.
ID | Year | Title | Journal | PMID | Variants |
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