Information on CTC1

Basic details

Alt. symbols: C17orf68 | FLJ22170 | AAF132

Approved name: CST telomere replication complex component 1
Alt. names: tmp494178, chromosome 17 open reading frame 68, CST telomere maintenance complex component 1 | conserved telomere maintenance component 1, alpha accessory factor 132, conserved telomere capping protein 1

Location: 17p13.1: 8224815 - 8248058 (-)
Gene type: protein_coding, 28 transcripts.

Scores: LoFtool: | pLI: 0.00000035 | LOEUF: 0.628

HGNC: 26169

NCBI: 80169, RefSeq: NG_032148.2

Ensembl: ENSG00000178971.17

LRG_1124 | Status: public

OMIM: 613129

Expression | ProteinAtlas

Normal function

Dysfunction and disease

Biallelic mutations in CTC1 cause Cerebroretinal microangiopathy with calcifications and cysts (CRMCC) [MIM:612199], also known as Coats plus. Coats plus is a syndrome that clinically overlaps Dyskeratosis congenita and it is primarily characterized by intracranial calcifications, leukodystrophy, and brain cysts, resulting in spasticity, ataxia, dystonia, seizures, and cognitive decline. Patients also have retinal telangiectasia and exudates (Coats disease) as well as extraneurologic manifestati ons, including osteopenia with poor bone healing and a high risk of gastrointestinal bleeding and portal hypertension caused by vasculature ectasias in the stomach, small intestine, and liver. Some individuals also have hair, skin, and nail changes, as well as anemia and thrombocytopenia. The first families were reported in 2012 by three different groups (PMIDs:22387016, 22532422, 22267198). They published 27 patients from 24 families who carried 20 different mutations. Today, there are about 40 different mutations classified as pathogenic in ClinVar, Varsome and/or UniProt, and about 30 of them are predicted loss-of-function (pLOF) mutations, but also some missense (p.A227V, V259M, V665G, R840W, V871M, R987W, L1142H) and splice-site mutations have been reported. Those missense mutations have been found only in heterozygosity in gnomAD and in less than 50 individuals each. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-04-16 16:06:44]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
CRMCC1 Cerebroretinal microangiopathy with calcifications and cysts 1 ARdict. icon 612199www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of CTC1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
214 ENST00000651323.1 1 CCDS42259 Select protein_coding 23 Yes 7039 NM_025099
206 ENST00000580299.2 protein_coding 21 No 375 XM_047436808
208 ENST00000581729.2 protein_coding 21 No 569 NM_001411067
215 ENST00000699849.1 protein_coding No XM_011524011
222 ENST00000699856.1 nonsense_mediated_decay No XM_047436805

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in CTC1

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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