Information on DIAPH1

Basic details

Alt. symbols: DFNA1 | hDIA1 | LFHL1

Approved name: diaphanous related formin 1
Alt. names: diaphanous (Drosophila, homolog) 1, diaphanous homolog 1 (Drosophila)

Location: 5q31.3: 141515016 - 141619055 (-)
Gene type: protein_coding, 15 transcripts.

Scores: LoFtool: 0.270000 | pLI: 0.26710967 | LOEUF: 0.320

HGNC: 2876

NCBI: 1729, RefSeq: NG_011594.2

Ensembl: ENSG00000131504.18

LRG_1117 | Status: public

OMIM: 602121

Expression | ProteinAtlas

Normal function

DIAPH1 encodes Diaphanous-related formin 1, a protein involved in the organization of the cytoskeleton and regulation of cell morphology during adhesion, migration and division in immune cells and neuroepithelial cells. Diaph1 binds to the rough ends of actin filaments and enables the assembly of linear actin filaments by administrating the process of actin polymerization. It is speculated that the biologic role of Diaph1 in hearing is the regulation of actin polymerization in hair cells of the inner ear. This theory is supported by Lynch et al. (1997), showing the expression of DIAPH1 in the cochlea by RT-PCR of cochlear RNA and by Neuhaus et al. (2017), showing the expression of Diaph1 in the organ of Corti in the inner ear of mice. In the latter study, Diaph1 was specifically expressed in hair cells as well as in neuronal cells in the ear, including spiral ganglion neurons and the cochlear nerve. Another study showed that Diaph1 is found in cells of the developing mouse and human forebrain (Ercan-Sencicek et al., 2015).

Dysfunction and disease

Mutations in DIAPH1 have been linked to autosomal dominant progressive non-syndromic hearing loss (DFNA1), as well as autosomal recessive cortical blindness and microcephaly syndrome. In a large Costa Rican family with various cases of DFNA1, a splice site mutation (c.3661+1G>T) in DIAPH1 was detected in affected family members leading to partial loss of function of the gene (Lynch et al., 1997). In two unrelated families with DFNA1 and thrombocytopenia, two heterozygous mutations in DIAPH1 were found leading to truncation of the protein; a frameshift mutation p.Ala1210Serfs*31, present in all five affected members of the first family, and a nonsense mutation p.Arg1213*, present in two of the affected members of the second family (Neuhaus et al., 2017). The nonsense mutation p.Arg1213* was also found in affected individuals of three additional unrelated families with DFNA1 and thrombocytopenia and segregated with disease in all three families (Stritt et al., 2016; Ganaha et al., 2017). In-vivo functional studies performed by Stritt et al. showed defective maturation and pro-platelet formation in megakaryocytes derived from one of the patients in comparison to control cells. Mutant platelets also presented with altered cytoskeleton including disorganized F-actin. Moreover, biallelic mutations in DIAPH1 (p.Gln778*, p.Phe923Leufs*4 and p.Arg1049*) have been associated with the development of cortical blindness, seizures and microcephaly syndrome [MIM:616632] in affected members of three unrelated families (Ercan-Sencicek et al., 2015; Al-Maawali et al., 2016). [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-02-25 12:13:50]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
DFNA1 Deafness 1, with or without thrombocytopenia ADdict. icon Gain of Function 124900www icon 88 (13 fams)
SCBMS Seizures, cortical blindness, microcephaly syndrome ARdict. icon Loss of Function 616632www icon 16 (9 fams)

Transcripts of DIAPH1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000389054.8 2 CCDS43374 Select protein_coding 28 Yes 5735 NM_005219
211 ENST00000518047.5 CCDS43373 protein_coding 27 No 4668 NM_001079812
218 ENST00000647433.1 CCDS87331 protein_coding 29 No 5843 NM_001314007

Published variants

Found 10 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
EX27+1G>T IN27 c.3661+1G>T ALTERS SPLICING! Pathogenic 19
R1213* EX27 3723 c.3637C>T p.Arg1213Ter stop_gained Pathogenic 40
A1210Sfs*31 EX27 3710-3711 c.3624_3625del p.Ala1210SerfsTer31 frameshift_variant Pathogenic 5
E1184Afs*11 EX26 3637-3638 c.3551_3552del p.Glu1184AlafsTer11 frameshift_variant Pathogenic 12
R1049* EX23 3231 c.3145C>T p.Arg1049Ter stop_gained Pathogenic 4
F923Lfs*4 EX21 2855 c.2769del p.Phe923LeufsTer4 frameshift_variant Pathogenic 4
Q778* EX16 2418 c.2332C>T p.Gln778Ter stop_gained Pathogenic 5
P678S EX16 2118 c.2032C>T p.Pro678Ser missense_variant Pathogenic 4
I530S EX15 1675 c.1589T>G p.Ile530Ser missense_variant Pathogenic 5
EX7+1G>A IN7 c.684+1G>A ALTERS SPLICING! Pathogenic 5

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in DIAPH1

ID Year Title Journal PMID Variants
765 2016 A gain-of-function variant in DIAPH1 causes dominant macroth... Blood 26912466 1
766 2017 Extension of the clinical and molecular phenotype of DIAPH1-... Clin. Gen. 27808407 2
767 1997 Nonsyndromic deafness DFNA1 associated with mutation of a hu... Science 9360932 1
768 2016 Novel loss-of-function variants in DIAPH1 associated with sy... Am. J. Hum. Genet. 26463574 2
769 2017 Progressive macrothrombocytopenia and hearing loss in a larg... Am. J. Hum. Genet. 28815995 1
770 2015 Homozygous loss of DIAPH1 is a novel cause of microcephaly i... Eur. J. Hum. Genet. 24781755 1
771 2021 Loss of DIAPH1 causes SCBMS, combined immunodeficiency, and ... JACI 33662367 2
772 2022 Homozygous Autosomal Recessive DIAPH1 Mutation Associated wi... Case Rep. Genet. 36212620 1
773 2022 Late-onset hearing loss case associated with a heterozygous ... Clin. Gen. 35060117 2
774 2017 A novel missense variant in the DIAPH1 gene in a Korean fami... Genes Genet. Syst. 28003573 1
775 2020 A novel variant in diaphanous homolog 1 (DIAPH1) as the caus... IJOPRL 32087478 1
777 2021 DIAPH1 Mutation as a Novel Cause of Autosomal Dominant Macro... Acta Haematol. 32594080 1
778 2016 Constitutive activation of DIA1 (DIAPH1) via C-terminal trun... EMBO Mol. Med. 27707755 1
779 2012 Targeted massive parallel sequencing: the effective detectio... Orph. J. Rare. Dis. 22938506 1

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