Information on DKC1

Basic details

Alt. symbols: DKC | XAP101 | dyskerin | NAP57 | NOLA4 | Cbf5

Approved name: dyskerin pseudouridine synthase 1
Alt. names: dyskeratosis congenita 1, dyskerin | H/ACA ribonucleoprotein complex subunit 4

Location: Xq28: 154762742 - 154777689 (+)
Gene type: protein_coding, 32 transcripts.

Scores: LoFtool: | pLI: 0.99890017 | LOEUF: 0.191

HGNC: 2890

NCBI: 1736, RefSeq: NG_009780.1

Ensembl: ENSG00000130826.19

LRG_55 | Status: public

OMIM: 300126

Expression | ProteinAtlas

Normal function

DKC1 encodes the H/ACA ribonucleoprotein complex subunit 4 known as dyskerin. This gene functions in two different complexes. It plays an active role in telomerase stabilization and maintenance, as well as recognition of snoRNAs containing H/ACA sequences which provides stability during biogenesis and assembly into H/ACA small nucleolar RNA ribonucleoproteins (snoRNPs). This gene is highly conserved and widely expressed, and may play additional roles in nucleo-cytoplasmic shuttling, DNA damage response, and cell adhesion.

Dysfunction and disease

Hemizygous mutations in the gene cause x-linked dyskeratosis congenita [MIM:305000]. Among the genes associated with telomeropathies, mutations in RTEL1 or TERT are the most frequently reported, however the highest number of pathogenic (or probably pathogenic) mutations are observed in the DKC1 gene (PMID:32930426). There are currently almost 90 different mutations reported to ClinVar, and more than 40 are considered pathogenic or likely pathogenic. Virtually all reported mutations to date are m issense, although a 2-Kb deletion, a promoter mutation, and a couple of splice-site mutations have also been reported. It is thought that these sequence changes probably interfere dyskerin's ability to bind to hTR (part of the telomerase complex), resulting in dysfunction of the whole complex. Telomerase dysfunction prevents the normal maintenance of telomeres and leads to reduced telomere length. Rapidly diving cells, such as cells of the nail beds, hair follicles, skin, lining of the mouth (oral mucosa), and bone marrow, are specially affected by the effects of shortened telomeres. Inadequate telomere maintenance may also result in the development of cancer in some patients. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-04-22 14:31:58]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
DKCX Dyskeratosis congenita, X-linked XLRdict. icon 305000www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of DKC1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
201 ENST00000369550.10 1 CCDS14761 Select protein_coding 15 Yes 2469 NM_001363
ENST00000696575.1 protein_coding 15 No NM_001142463
ENST00000696577.1 protein_coding 14 No NM_001288747

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Skewed X-linked inactivation-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in DKC1

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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