Information on ERCC4

Basic details

Alt. symbols: XPF | RAD1 | FANCQ

Approved name: ERCC excision repair 4, endonuclease catalytic subunit
Alt. names: excision repair cross-complementing rodent repair deficiency, complementation group 4, excision repair cross-complementation group 4 | xeroderma pigmentosum, complementation group F

Location: 16p13.12: 13920138 - 13952348 (+)
Gene type: protein_coding, 16 transcripts.

Scores: LoFtool: 0.878000 | pLI: 0.00000000 | LOEUF: 0.896

HGNC: 3436

NCBI: 2072, RefSeq: NG_011442.1

Ensembl: ENSG00000175595.16

LRG_463 | Status: public

OMIM: 133520

Expression | ProteinAtlas

Normal function

ERCC4 encodes XPF, the DNA endonuclease/catalytic component that partners with ERCC1 to form the ERCC1-XPF enzyme complex, which is essential for DNA nucleotide excision repair (NER). The ERCC1-XPF nuclease complex functions in pathways to repair double-strand breaks in DNA, and also contributes to the homologous recombination aspect of inter-strand cross-link repair.

Dysfunction and disease

Bi-allelic frameshift, nonsense, missense and splice site mutations in ERCC4 have been linked to 4 autosomal recessive conditions: Fanconi anemia, complementation group Q [MIM:615272], XFE progeroid syndrome [MIM:610965], Xeroderma pigmentosum (XP), type F [MIM:278760], as well as an XP/Cockayne syndrome overlap phenotype. Complete ERCC4 loss-of-function (LOF) in humans has not been observed thus far. Cells with disabling mutations in ERCC4 are more sensitive than normal to particular DNA damagi ng agents, including ultraviolet radiation and chemicals that cause crosslinking between DNA strands. Complete deletion of ERCC4 is incompatible with life in mice, and mice expressing low levels of ERCC4 show defects in DNA repair, accompanied by metabolic stress-induced changes in physiology that result in premature ageing (PMID:21612988). A complete (homozygous) deletion of ERCC4 in humans has not been observed thus far. At least a dozen of pathogenic mutations in ERCC4 have been reported in humans, including frameshift (i.e. p.Thr173fs, p.Ile357fs, p.Thr495fs, p.Glu628fs, p.Ile800fs), missense (i.e. p.Arg153Pro, p.Cys236Arg, p.Arg689Ser, p.Leu230Pro), nonsense (i.e. p.Tyr577*), and splice-site (i.e. c.793-2A>G) mutations. Immunodeficiency or autoimmunity have not been specifically described for ERCC4-associated conditions. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-09-30 14:39:45]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
FANCQ Fanconi anemia, complementation group Q ARdict. icon 615272www icon 0 (0 fams)
XPF Xeroderma pigmentosum, complementation group F ARdict. icon 278760www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of ERCC4

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
202 ENST00000389138.7 retained_intron No XM_011522427
201 ENST00000311895.8 1 CCDS32390 Select protein_coding 11 Yes 6764 NM_005236
211 ENST00000682617.1 protein_coding 12 No XM_011522424

Published variants

Found 1 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
P6S EX1 28 c.16C>T p.Pro6Ser missense_variant Likely Benign 0

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in ERCC4

ID Year Title Journal PMID Variants
424 2006 Evaluation of xeroderma pigmentosum XPA, XPC, XPD, XPF, XPB,... Int. J. Caner 16550608 1
425 2014 Germline variation in cancer-susceptibility genes in a healt... Plos Gen. 24728327 1

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