Information on FANCI

Basic details

Alt. symbols: KIAA1794 | FLJ10719

Approved name: FA complementation group I
Alt. names: KIAA1794, Fanconi anemia complementation group I

Location: 15q26.1: 89243945 - 89317261 (+)
Gene type: protein_coding, 27 transcripts.

Scores: LoFtool: 0.265000 | pLI: 0.00000000 | LOEUF: 1.024

HGNC: 25568

NCBI: 55215, RefSeq: NG_011736.1

Ensembl: ENSG00000140525.20

LRG_500 | Status: public

OMIM: 611360

Expression | ProteinAtlas

Normal function

FANCI plays an essential role in DNA double-strand break (DSB) repair via homologous recombination (HR), as well as in interstrand DNA cross-link (ICL) repair by promoting FANCL-mediated FANCD2 monoubiquitination and recruitment to DNA repair sites. As such, it participates in S phase and G2 phase checkpoint activation upon DNA damage and is required for maintaining genome stability.

Dysfunction and disease

Biallelic homozygous or compound heterozygous mutations in FANCI are associated with Fanconi anemia (FA) complementation group I [MIM:609053]. Missense, nonsense, frameshift, and splice site mutations in FANCI have all been described. FA is a multi-system syndrome featuring a broad spectrum of congenital anomalies in addition to bone marrow failure and increased risk for malignancy. Physical abnormalities are present in ~75% and include one or more of the following: short stature, abnormal skin pigmentation, skeletal malformations of the upper and lower limbs, microcephaly, and ophthalmic and genitourinary tract anomalies. Progressive bone marrow failure with pancytopenia typically presents in the first decade, while the incidence of acute myeloid leukemia (AML) is 13% by age 50. Moreover, due to the involvement of FA genes in key DNA repair pathways, these individuals are also at increased risk for solid tumors – particularly of the head and neck, skin, gastrointestinal tract, and genitourinary tract; for some FA genes (i.e. BRCA1, PALB2), this may occur with even 1 heterozygous mutation, but this has not been definitively demonstrated for FANCI carriers. Of note, while digenic causes of FA have been proposed (PMID: 33224012; Murad et al. AJMB 2019), those involving FANCI mutations have thus far not been described. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2021-01-22 14:34:10]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
FANCI Fanconi anemia, complementation group I ARdict. icon 609053www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of FANCI

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
220 ENST00000676003.1 protein_coding 39 No 4503 XM_047432802
201 ENST00000300027.12 CCDS10349 protein_coding 37 No 4713 NM_018193
202 ENST00000310775.12 1 CCDS45346 Select protein_coding 38 Yes 4733 NM_001113378,NM_001376911
224 ENST00000696719.1 CCDS45346 protein_coding 39 No XM_047432789
222 ENST00000696717.1 protein_coding No NM_001376910

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in FANCI

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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