Information on FANCI
Basic details
Alt. symbols: KIAA1794 | FLJ10719
Approved name: FA complementation group I
Alt. names: KIAA1794, Fanconi anemia complementation group I
Location: 15q26.1: 89243945 - 89317261 (+)
Gene type: protein_coding, 27 transcripts.
Scores: LoFtool: 0.265000 | pLI: 0.00000000 | LOEUF: 1.024
Normal function
FANCI plays an essential role in DNA double-strand break (DSB) repair via homologous recombination (HR), as well as in interstrand DNA cross-link (ICL) repair by promoting FANCL-mediated FANCD2 monoubiquitination and recruitment to DNA repair sites. As such, it participates in S phase and G2 phase checkpoint activation upon DNA damage and is required for maintaining genome stability.
Dysfunction and disease
Biallelic homozygous or compound heterozygous mutations in FANCI are associated with Fanconi anemia (FA) complementation group I [MIM:609053]. Missense, nonsense, frameshift, and splice site mutations in FANCI have all been described. FA is a multi-system syndrome featuring a broad spectrum of congenital anomalies in addition to bone marrow failure and increased risk for malignancy. Physical abnormalities are present in ~75% and include one or more of the following: short stature, abnormal skin pigmentation, skeletal malformations of the upper and lower limbs, microcephaly, and ophthalmic and genitourinary tract anomalies. Progressive bone marrow failure with pancytopenia typically presents in the first decade, while the incidence of acute myeloid leukemia (AML) is 13% by age 50. Moreover, due to the involvement of FA genes in key DNA repair pathways, these individuals are also at increased risk for solid tumors – particularly of the head and neck, skin, gastrointestinal tract, and genitourinary tract; for some FA genes (i.e. BRCA1, PALB2), this may occur with even 1 heterozygous mutation, but this has not been definitively demonstrated for FANCI carriers. Of note, while digenic causes of FA have been proposed (PMID: 33224012; Murad et al. AJMB 2019), those involving FANCI mutations have thus far not been described. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2021-01-22 14:34:10]
Associated conditions
Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of FANCI
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
220 | ENST00000676003.1 | protein_coding | 39 | No | 4503 | XM_047432802 | |||
201 | ENST00000300027.12 | CCDS10349 | protein_coding | 37 | No | 4713 | NM_018193 | ||
202 | ENST00000310775.12 | 1 | CCDS45346 | Select | protein_coding | 38 | Yes | 4733 | NM_001113378,NM_001376911 |
224 | ENST00000696719.1 | CCDS45346 | protein_coding | 39 | No | XM_047432789 | |||
222 | ENST00000696717.1 | protein_coding | No | NM_001376910 |
Published variants
Found 0 variants
Var.name | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in FANCI
ID | Year | Title | Journal | PMID | Variants |
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