Information on FAS

Basic details

Alt. symbols: FAS1 | APT1 | TNFRSF6 | CD95 | APO-1

Approved name: Fas cell surface death receptor
Alt. names: tumor necrosis factor receptor superfamily, member 6, Fas (TNF receptor superfamily, member 6) | TNF receptor superfamily member 6

Location: 10q23.31: 88953813 - 89029605 (+)
Gene type: protein_coding, 61 transcripts.

Scores: LoFtool: 0.062800 | pLI: 0.72617334 | LOEUF: 0.441

HGNC: 11920

NCBI: 355, RefSeq: NG_009089.2

Ensembl: ENSG00000026103.25

LRG_134 | Status: public

OMIM: 134637

Expression | ProteinAtlas

Normal function

This gene encodes for a cell surface protein receptor known as Fas (or FasR). Binding of Fas-ligand (FasL) to FasR induces its trimerization and initiates the caspase cascade, which ultimately leads to apoptosis, or cell death. FasL/FasR signalling pathway is essential for immune system regulation, including activation-induced cell death (AICD) of T cells, cytotoxic T lymphocyte induced cell death and natural killer cell-mediated apoptosis, or for the progression of cancer. It is suspected that FAS-mediated apoptosis has also a role in the induction of peripheral tolerance. Soluble Fas ligand is generated by cleaving membrane-bound FasL at a conserved cleavage site by the external matrix metalloproteinase MMP-7. This cytoplasmic form induces gene transcription inhibition.

Dysfunction and disease

Monoallelic mutations in FAS cause the most common and best-characterized form of autoimmune lymphoproliferative syndrome (ALPS, type IA) [MIM:601859]. In ALPS-FAS non-malignant lymphoproliferation typically manifests in the first years of life, which often decreases without treatment in the second decade of life. However, in many patients neither splenomegaly nor the overall expansion of lymphocyte subsets in peripheral blood decreases. Although autoimmunity is often not present at the time of diagnosis or at the time of the most extensive lymphoproliferation, autoantibodies can be detected before autoimmune disease manifests clinically. Biallelic mutations in FAS cause severe lymphoproliferation perinatally and usually results in early death. Somatic mutations can cause a similar phenotype to that observed in individuals with heterozygous germline FAS mutations, although lower incidence of splenectomy and lower lymphocyte counts are observed. In addition FAS mutations have been associated with increased risk of developing cancer, including cancers of the lung, breast, and esophagus. More than 115 mutations in FAS have been associated with disease thus far. [Load More]

[Reviewed by Hanna Haberstroh on 2020-07-27 14:42:01]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
ALPSIA Autoimmune lymphoproliferative syndrome, type IA ARdict. icon 601859www icon 0 (0 fams)
sALPS Somatic ALPS type IA Sodict. icon Loss of Function - 0 (0 fams)
ALPSIC Autoimmune lymphoproliferative syndrome, type IC ADdict. icon Haploinsufficiency 601859www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of FAS

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
221 ENST00000652046.1 1 CCDS7393 Select protein_coding 9 Yes 3696 NM_000043
209 ENST00000477270.6 processed_transcript 9 No NM_001410956
203 ENST00000355279.2 CCDS7395 protein_coding 8 No 983 NM_152872
205 ENST00000357339.7 CCDS7394 protein_coding 8 No 1044 NM_152871
204 ENST00000355740.8 protein_coding 8 No 2605 NM_001320619
223 ENST00000690268.1 protein_coding 11 No XM_006717819

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
1999Incomplete penetrance10090885
2010Mosaicism20360470[somatic]
2011Mosaicism21183795[somatic]
2004Mosaicism15459302[somatic]
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in FAS

ID Year Title Journal PMID Variants

Phenotypic & functional assays available?

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