Information on GFI1
Alt. symbols: ZNF163 | GFI1A | GFI-1
Approved name: growth factor independent 1 transcriptional repressor
Alt. names: growth factor independent 1
Location: 1p22.1: 92473043 - 92486925 (-)
Gene type: protein_coding, 9 transcripts.
Scores: LoFtool: 0.557000 | pLI: 0.02962856 | LOEUF: 0.561
Gene Ontology (GO)
- Molecular function: RNA polymerase II cis-regulatory region sequence-specific DNA binding [GO:0000978]; DNA-binding transcription factor activity [GO:0003700]
- Cell component:
- Biological process: regulation of transcription by RNA polymerase II [GO:0006357]
Normal function
Dysfunction and disease
Monoallelic mutations in this gene have been described to cause an autosomal dominant form of severe congenital neutropenia (SCN), namely SCN2 [MIM:613107], which is caused by the missense mutation: p.Asn382Ser (Person et al. 2003, Armistead et al. 2010). However, a milder form, known as nonimmune chronic idiopathic neutropenia of adults [MIM:607847] has been reported (Person et al. 2003). The patient carried the missense mutation p.Lys403Arg and had been found to be neutropenic for 10 years. Af ter identification of the mutation, she persistently had low neutrophil count and elevated monocytes. Both mutations alter important residues from the fifth (p.N382S) and sixth (p.K403R) zinc-finger domains of the protein. [Load More]
[Reviewed by Andrés Caballero-Oteyza on 2020-09-22]
Associated conditions
Please mind that curation (inclusion of all reported patients) of this gene has not started yet. Please contact us if you want to volunteer.
Transcripts of GFI1
Name | ENSEMBL_ID | LRG_ID | CCDS_ID | MANE | Transcript.type | Exons | Canonical | CDS_length | REFSEQ_ID |
---|---|---|---|---|---|---|---|---|---|
203 | ENST00000427103.6 | CCDS30773 | protein_coding | 7 | No | 2693 | NM_001127216 | ||
201 | ENST00000294702.6 | 1 | CCDS30773 | Select | protein_coding | 7 | Yes | 4554 | NM_005263 |
202 | ENST00000370332.5 | CCDS30773 | protein_coding | 7 | No | 2855 | NM_001127215 |
Published variants
Found 0 variants
Var.name ⓘ | Exon/Intron | cDNA_pos. | CDS_change | Prot.change | Var.type | Var.class. | Patients |
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Please mind that curation (inclusion of all reported gene variants) has not started yet. Please contact us if you want to volunteer.
Diagnostic pitfalls & paradigms
Considerations to take into account when analyzing this gene
Year | Paradigm ⓘ | PMID | Notes |
---|---|---|---|
- | Regions of Homology | - | |
- | Cryptic splicing | - | Unreported or not recorded in our DB. |
- | Uniparental disomy | - | Unreported or not recorded in our DB. |
- | Mosaicism | - | Unreported or not recorded in our DB. |
- | Incomplete penetrance | - | Unreported or not recorded in our DB. |
- | Di-/oligo-genic inheritance | - | Unreported or not recorded in our DB. |
- | Somatic reversion | - | Unreported or not recorded in our DB. |
References linked to variants in GFI1
Please mind that curation (inclusion of all relevant literature) has not started yet. Please contact us if you want to volunteer.
ID | Year | Title | Journal | PMID | Variants |
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