Information on GFI1

Basic details

Alt. symbols: ZNF163 | GFI1A | GFI-1

Approved name: growth factor independent 1 transcriptional repressor
Alt. names: growth factor independent 1

Location: 1p22.1: 92473043 - 92486925 (-)
Gene type: protein_coding, 9 transcripts.

Scores: LoFtool: 0.557000 | pLI: 0.02962856 | LOEUF: 0.561

HGNC: 4237

NCBI: 2672, RefSeq: NG_007874.1

Ensembl: ENSG00000162676.13

LRG_63 | Status: public

OMIM: 600871

Expression | ProteinAtlas

Normal function

Dysfunction and disease

Monoallelic mutations in this gene have been described to cause an autosomal dominant form of severe congenital neutropenia (SCN), namely SCN2 [MIM:613107], which is caused by the missense mutation: p.Asn382Ser (Person et al. 2003, Armistead et al. 2010). However, a milder form, known as nonimmune chronic idiopathic neutropenia of adults [MIM:607847] has been reported (Person et al. 2003). The patient carried the missense mutation p.Lys403Arg and had been found to be neutropenic for 10 years. Af ter identification of the mutation, she persistently had low neutrophil count and elevated monocytes. Both mutations alter important residues from the fifth (p.N382S) and sixth (p.K403R) zinc-finger domains of the protein. [Load More]

[Reviewed by Andrés Caballero-Oteyza on 2020-09-22 13:35:59]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
SCN2 Severe congenital neutropenia 2 ADdict. icon 613107www icon 0 (0 fams)
NI-CINA Neutropenia, nonimmune chronic idiopathic, of adults ADdict. icon 607847www icon 0 (0 fams)

Please mind that full curation (inclusion of all published patients) of this gene has not started yet. Please contact us if you want to volunteer.

Transcripts of GFI1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
203 ENST00000427103.6 CCDS30773 protein_coding 7 No 2693 NM_001127216
201 ENST00000294702.6 1 CCDS30773 Select protein_coding 7 Yes 4554 NM_005263
202 ENST00000370332.5 CCDS30773 protein_coding 7 No 2855 NM_001127215

Published variants

Found 0 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients

Please mind that full curation (inclusion of all published variants) of this gene has not started yet. Please contact us if you want to volunteer.

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in GFI1

ID Year Title Journal PMID Variants

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