Information on GINS1

Basic details

Alt. symbols: KIAA0186 | PSF1

Approved name: GINS complex subunit 1
Alt. names: GINS complex subunit 1 (Psf1 homolog)

Location: 20p11.21: 25391008 - 25452700 (+)
Gene type: protein_coding, 25 transcripts.

Scores: LoFtool: 0.598000 | pLI: 0.05003698 | LOEUF: 1.277

HGNC: 28980

NCBI: 9837, RefSeq: .0

Ensembl: ENSG00000101003.12

LRG_ | Status: none

OMIM: 610608

Expression | ProteinAtlas

Normal function

The gene GINS1 encodes a subunit of the heterotetrameric protein complex GINS, which plays a role in the initiation and elongation stages of eukaryotic DNA replication. First described in the yeast Saccaromyces cerevisiae, the GINS complex is composed of four subunits Sld5 (GINS4), Psf1 (GINS1), Psf2 (GINS2), and Psf3 (GINS3), which are all conserved among eukaryotes. The GINS complex is found to be a component of the replicative helicase machinery and holds a key role in DNA replication by establishing the initiation complex after pre-replicative complex assembly. After maturation, this complex ensures the initiation of DNA synthesis.

Dysfunction and disease

Mutations in GINS1 have been associated with immunodeficiency 55, an autosomal recessive immunodeficiency characterized by intrauterine and postnatal growth retardation, chronic neutropenia and natural killer (NK) cell deficiency, which is caused by a defect in DNA replication that prevents immune cell differentiation in the bone marrow, especially affecting differentiation of NK cells. Further clinical manifestations are mild facial dysmorphism, eczema as well as recurrent viral and bacterial i nfections. Whole exome sequencing analysis of five immunodeficiency-55 patients from four unrelated families resulted in the identification of compound heterozygous mutations in GINS1 (Cottineau et al., 2017). Two of the variants that resulted in altered splicing events (c.-60A>G, c.-48C>G) were found in the 5'UTR in exon 1, whereas two missense variants were found in exon 4 (R83C) and exon 6 (C152Y), respectively. In compound heterozygosity of either one of the splicing variants with the R83C missense variant or the c.-48C>G splicing variant with the C152Y missense variant, GINS1 protein levels in the patients cells were shown to be decreased and GINS complex assembly was impaired, which resulted in replication stress. In contrast, heterozygous carriers in the families were not affected. [Load More]

[Reviewed by Hanna Haberstroh on 2020-10-16 11:24:33]

Associated conditions

Acronym Condition's_name MOI Mode_of_actionwww icon OMIM_ID No.cases
IMD55 Immunodeficiency 55 ARdict. icon Loss of Function 617827www icon 6 (5 fams)

Transcripts of GINS1

Name ENSEMBL_ID LRG_ID CCDS_ID MANE Transcript.type Exons Canonical CDS_length REFSEQ_ID
204 ENST00000484893.2 processed_transcript 8 No XM_017028162
201 ENST00000262460.5 CCDS33451 Select protein_coding 7 Yes 3311 NM_021067
208 ENST00000696804.1 protein_coding No NM_001410830
210 ENST00000696806.1 protein_coding No NM_001410831

Published variants

Found 5 variants

Var.name Exon/Intron cDNA_pos. CDS_change Prot.change Var.type Var.class. Patients
EX1-60A>G EX1 89 c.-60A>G ALTERS SPLICING! Pathogenic 1
EX1-48C>G EX1 101 c.-48C>G ALTERS SPLICING! Pathogenic 4
V47M EX2 287 c.139G>A p.Val47Met missense_variant Likely Pathogenic 1
R83C EX4 395 c.247C>T p.Arg83Cys missense_variant Pathogenic 5
C152Y EX6 603 c.455G>A p.Cys152Tyr missense_variant Pathogenic 1

Diagnostic pitfalls & paradigms

Considerations to take into account when analyzing this gene

Year Paradigm ⓘ PMID Notes
- Regions of Homology -
-Cryptic splicing-Unreported or not recorded in our DB.
-Uniparental disomy-Unreported or not recorded in our DB.
-Mosaicism-Unreported or not recorded in our DB.
-Incomplete penetrance-Unreported or not recorded in our DB.
-Di-/oligo-genic inheritance-Unreported or not recorded in our DB.
-Somatic reversion-Unreported or not recorded in our DB.

References linked to variants in GINS1

ID Year Title Journal PMID Variants
346 2017 Inherited GINS1 deficiency underlies growth retardation alon... J. Clin. Investig. 28414293 4
347 2019 Genetic Disorders in Prenatal Onset Syndromic Short Stature ... J. Pediatr. 31630891 2

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